Whole Exome sequencing for the 1000 Genomes Project - SRA

SRX103826: Whole Exome sequencing for the 1000 Genomes Project
8 ILLUMINA (Illumina HiSeq 2000) runs: 23.5M spots, 3.8G bases, 2.5Gb downloads

Design: Whole Exome sequencing for the 1000 Genomes Project via in-solution hybrid selection

Submitted by: Broad Institute (BI)

Study: Exome sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam HapMap population

Sample: Coriell HG01863

Library:

Name: Catch-88559

Instrument: Illumina HiSeq 2000

Strategy: WXS

Source: GENOMIC

Selection: Hybrid Selection

Layout: PAIRED

Spot descriptor:

1 forward barcode

Group tag	Basecalls
tagged_34	AACTTGAC

85 reverse

BI GSSR sample ID: 120492.0 
BI GSSR sample LSID: broadinstitute.org:bsp.prod.sample:25MRQ 
BI project name: C469 
BI work request ID: 26159 

Name	Step	Program	Version
base caller	2011-09-12 08:37:04.0	GAPipeline	RTA1.12.4.2

Runs: 8 runs, 23.5M spots, 3.8G bases, 2.5Gb

Run	# of Spots	# of Bases	Size	Published
SRR359365	2,947,370	471.6M	317.7Mb	2011-10-29
SRR359367	2,906,515	465M	314.3Mb	2011-10-29
SRR359370	3,002,188	480.4M	325.3Mb	2011-10-29
SRR359373	2,986,385	477.8M	323.9Mb	2011-10-29
SRR359382	2,600,784	416.1M	281.4Mb	2011-10-29
SRR359389	2,963,261	474.1M	322.2Mb	2011-10-29
SRR359392	3,004,565	480.7M	327.7Mb	2011-10-29
SRR359397	3,051,475	488.2M	330.6Mb	2011-10-29

Supplemental Content

PREDICTED: Homo sapiens phosphoserine phosphatase (PSPH), transcript variant X8,...
PREDICTED: Homo sapiens phosphoserine phosphatase (PSPH), transcript variant X8, mRNA
gi|2217367949|ref|XM_047420650.1|

Nucleotide
PREDICTED: Equus asinus FXYD domain containing ion transport regulator 1 (FXYD1)...
PREDICTED: Equus asinus FXYD domain containing ion transport regulator 1 (FXYD1), transcript variant X2, mRNA
gi|2124491093|ref|XM_044759514.1|

Nucleotide
Gdi1 protein, partial [Tricholoma fulvocastaneum]
Gdi1 protein, partial [Tricholoma fulvocastaneum]
gi|2288963987|gb|UVH37851.1|

Protein
Gdi1 protein, partial [Tricholoma sp. 24 XXD-2021]
Gdi1 protein, partial [Tricholoma sp. 24 XXD-2021]
gi|2288963989|gb|UVH37852.1|

Protein
Gdi1 protein, partial [Tricholoma sp. 30 XXD-2021]
Gdi1 protein, partial [Tricholoma sp. 30 XXD-2021]
gi|2288963993|gb|UVH37854.1|

Protein

Your browsing activity is empty.

Activity recording is turned off.

SRA